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Official Journal of the Japan Wood Research Society

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Table 3 Decreased 2DE gel spot volumes in ammonia-treated vs. untreated birch wood meal cultures

From: Secretome analysis of the basidiomycete Phanerochaete chrysosporium grown on ammonia-treated lignocellulosic biomass from birch wood

Spot number Protein family Function (gene or domain) Normalized average volume Relative degree
UB × 107 AB × 107
33 GH 74 Xyloglucanase (xgh74B) 0.45 0.04 0.087
20 GH 10 Putative endo-β-1,4-xylanase (xyn10C) 0.92 0.12 0.14
34 GH 74 Xyloglucanase (xgh74B) 0.81 0.17 0.21
27 GH 28 Putative rhamnogalacturonase (rgh28C) 0.14 0.04 0.30
49 AA8-AA3_1 Iron reductase domain/cellobiose dehydrogenase (cdh) 0.56 0.20 0.36
39 CE 1 Putative acetyl xylan esterase (axe1) 0.71 0.32 0.45
  1. Spots showing a normalized average volume decreased by 0.5-fold or greater on 2DE gels in AB vs. UB cultures. Spot numbers correspond to those in Fig. 3 and Table 1, and the intensity was analyzed by Prodigy 2D version 1.0. The relative degree was calculated as the normalized average volume of AB divided by the normalized average volume of UB
  2. UB untreated birch wood meal, AB ammonia-treated birch wood meal