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Official Journal of the Japan Wood Research Society

Table 2 Bacterial and fungal species identified in the logs

From: Microbiological community structure on logs used for groynes in a riverbank system

  Bacteria Fungi
Identification Taxonomya Sampling siteb Number of clones Identification Taxonomya Sampling siteb Number of clones
Aerial section Firmicutes sp. BF 7 1 Botrytis cinerea FA 4 2
Bradyrhizobium sp. Bpa 7 1 Penicillium bialowiezense FA 7 3
Dongia sp. Bpa 7 2 Xeromphalina sp. FB 4, 7 6
Opitutus sp. BV 7 1 Leucosporidium sp. FB 7 1
     Psathyrella abieticola FB 7 1
     Camellia sinensis P 4 1
Aqueous section Bradyrhizobium sp. Bpa 1 2 Ramularia sp. FA 1 3
Lactobacillus sp. BF 1 1 Xeromphalina sp. FB 1 1
Staphylococcus warneri BF 1 1 Camellia sinensis P 1 3
Underground section Caulobacter henricii Bpa 5 1 Byssomerulius corium FB 2 1
Dongia sp. Bpa 5 1 Mortierella sp. FM 5 2
Escherichia sp. FPg 5 1 Rubellisphaeria abscondita FA 5 1
Rhizobium sp. Bpa 5 1 Xeromphalina sp. FB 5 3
Staphylococcus sp. BF 5 1 Xylodon paradoxus FB 2, 9 7
Streptomyces sp. BA 5 1 Cucumis melo P 5 1
Pencil-shaped section Actinomycetes sp. BAc 6 1 Uncultured organism clone U 6 2
Anaerosinus sp. BF 3 1     
Chloroflexi spp. BC 3, 6, 10 3     
Cutibacterium acnes BA 3 1     
Dactylosporangium sp. BA 3 1     
Firmicutes sp. BF 10 3     
Methylocystis sp. BPa 3 1     
Pantoea sp. BPg 6 1     
Pseudomonas spp. BPg 6, 10 7     
Rothia mucilaginosa BA 3 1     
Smithella sp. BPd 3 1     
Stenotrophomonas maltophilia BPg 6 1     
Streptococcus pneumoniae BF 6 1     
Syntrophomonas spp. BF 6, 10 2     
Veillonellaceae sp. BF 10 1     
Zoogloea sp. BPb 10 1     
  1. aBA Actinomycetes, BAc Acidobacteria, BC Chloroflexi, BF Firmicutes, BPa Alphaproteobacteria, BPb Betaproteobacteria, BPg Gammaproteobacteria, BPd Deltaproteobacteria, BV Verrucomicrobia, FB Basidiomycota, FM Mucoromycota, P plant, U unidentified
  2. bSee Fig. 2